org.bch.fhir.i2b2.external

Class I2B2CellFR

java.lang.Object

org.bch.fhir.i2b2.external.WrapperAPI

org.bch.fhir.i2b2.external.I2B2CellFR

public class I2B2CellFR
extends WrapperAPI

Manages the connectivity between the I2B2 FR and CRC cell to push pdo xml files and upload them into i2b2 using the standard i2b2 messaging

Author:

CHIP-IHL

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	I2B2CellFR.UploadI2B2Response Class to capture the responses from I2B2
static class	I2B2CellFR.XmlPdoTag The enum class for the xml pdo set tags

Constructor Summary

Constructors

Constructor and Description
I2B2CellFR()

Method Summary

Methods

Modifier and Type	Method and Description
static java.lang.String	calcFileHash(java.lang.String fileData) Computes the MD5 hash of the file
static java.lang.String	calcFileSize(java.lang.String fileData) Computes the size of the file
static java.lang.String	generateFileSendRequest(java.lang.String date, java.lang.String i2b2Domain, java.lang.String i2b2User, java.lang.String i2b2Pass, java.lang.String projectId, java.lang.String fileSize, java.lang.String fileName, java.lang.String fileHash) Generates the pdo xml message to I2B2 FR to send a file
java.lang.String	generateURLSend() Generates the URL to connect to the I2B2 FR cell
java.lang.String	generateURLUpload() Generates the URL where to connect to the I2B2 CRC cell
I2B2CellFR.UploadI2B2Response	pushPDOXML(java.lang.String pdoxml) Send a pdoxml file to i2b2 and uploads its content to the CRC cell

Methods inherited from class org.bch.fhir.i2b2.external.WrapperAPI

getHttpRequest, getSoapRequest, log, setHttpRequest, setSoapRequest

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

I2B2CellFR

public I2B2CellFR()

Method Detail

pushPDOXML

public I2B2CellFR.UploadI2B2Response pushPDOXML(java.lang.String pdoxml)
                                         throws FHIRI2B2Exception,
                                                java.io.IOException

Send a pdoxml file to i2b2 and uploads its content to the CRC cell

Parameters:

pdoxml - The pdo xml

Returns:

The response of the i2b2

Throws:

FHIRI2B2Exception

java.io.IOException

generateURLSend

public java.lang.String generateURLSend()
                                 throws FHIRI2B2Exception

Generates the URL to connect to the I2B2 FR cell

Returns:

The URL

Throws:

FHIRI2B2Exception - In case there are missing properties that prevent to construct the URL

generateURLUpload

public java.lang.String generateURLUpload()
                                   throws FHIRI2B2Exception

Generates the URL where to connect to the I2B2 CRC cell

Returns:

The URL

Throws:

FHIRI2B2Exception - In case there are missing properties that prevent to construct the URL

generateFileSendRequest

public static java.lang.String generateFileSendRequest(java.lang.String date,
                                       java.lang.String i2b2Domain,
                                       java.lang.String i2b2User,
                                       java.lang.String i2b2Pass,
                                       java.lang.String projectId,
                                       java.lang.String fileSize,
                                       java.lang.String fileName,
                                       java.lang.String fileHash)

Generates the pdo xml message to I2B2 FR to send a file

Parameters:

date - The date

i2b2Domain - The I2B2 domain

i2b2User - The authorized I2B2 user to upload the file

i2b2Pass - The password

projectId - The I2B2 project id

fileSize - The file size calculated with calcFileSize(String)

fileName - The filename

fileHash - The hash of the file calculated with calcFileHash(String)

Returns:

The message

calcFileHash

public static java.lang.String calcFileHash(java.lang.String fileData)

Computes the MD5 hash of the file

Parameters:

fileData - The file content

Returns:

The hash value

calcFileSize

public static java.lang.String calcFileSize(java.lang.String fileData)

Computes the size of the file

Parameters:

fileData - The file content

Returns:

The size in number of characters